Difference between revisions of "Species Products Discovery Objects"
(→TaxonomyItem) |
(→TaxonomyItem) |
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! scope="col" style="background:#efefef;" | '''Mapping''' | ! scope="col" style="background:#efefef;" | '''Mapping''' | ||
|- | |- | ||
− | + | | '''author''' | |
− | + | | If the authority is known and can be separated from the rest of the scientific name, the authority string should also be placed in the ‘author’ field. | |
Example: (Schltdl.) Crins | Example: (Schltdl.) Crins | ||
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''DwC term: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship'' | ''DwC term: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship'' | ||
− | + | | brazilian-flora-spd-plugin: au | |
catalogue-of-life-spd-plugin: author | catalogue-of-life-spd-plugin: author | ||
Line 34: | Line 34: | ||
|- | |- | ||
− | + | | '''citation''' | |
− | + | | Citation information specified by the data publisher. | |
Example: | Example: | ||
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''DwC term: http://rs.tdwg.org/dwc/terms/nameAccordingTo'' | ''DwC term: http://rs.tdwg.org/dwc/terms/nameAccordingTo'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: | catalogue-of-life-spd-plugin: | ||
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|- | |- | ||
− | + | | '''commonNames''' | |
− | + | | A common or vernacular name. | |
Example: “Andean Condor", "Condor Andino", "American Eagle", "Gönsegeier" | Example: “Andean Condor", "Condor Andino", "American Eagle", "Gönsegeier" | ||
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''DwC term: http://rs.tdwg.org/dwc/terms/vernacularName'' | ''DwC term: http://rs.tdwg.org/dwc/terms/vernacularName'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: common_names | catalogue-of-life-spd-plugin: common_names | ||
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|- | |- | ||
− | + | | '''credits''' | |
− | + | | Citation information specified by the data publisher. | |
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''DwC term: http://purl.org/dc/terms/bibliographicCitation'' | ''DwC term: http://purl.org/dc/terms/bibliographicCitation'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: | catalogue-of-life-spd-plugin: | ||
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|- | |- | ||
− | + | | '''id''' | |
− | + | | The unique identifier used for a name or taxon reference in the core data file. | |
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''DwC term: http://rs.tdwg.org/dwc/terms/taxonID'' | ''DwC term: http://rs.tdwg.org/dwc/terms/taxonID'' | ||
− | + | | brazilian-flora-spd-plugin: id | |
catalogue-of-life-spd-plugin: id | catalogue-of-life-spd-plugin: id | ||
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|- | |- | ||
− | + | | '''lsid''' | |
− | + | | Exclusively used to reference an external and resolvable identifier that returns nomenclatural (not taxonomic) details of a name. Use taxonID to refer to taxa. Use to explicitly refer to an external nomenclatural record. | |
Example: “urn:lsid:ipni.org:names:37829-1:1.3”http://rs.tdwg.org/dwc/terms/scientificNameID | Example: “urn:lsid:ipni.org:names:37829-1:1.3”http://rs.tdwg.org/dwc/terms/scientificNameID | ||
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''DwC term: http://rs.tdwg.org/dwc/terms/scientificNameID'' | ''DwC term: http://rs.tdwg.org/dwc/terms/scientificNameID'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: | catalogue-of-life-spd-plugin: | ||
Line 165: | Line 165: | ||
|- | |- | ||
− | + | | '''modified''' | |
− | + | | Date when the record was last updated | |
Example: “2009-08-21” | Example: “2009-08-21” | ||
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''DwC term: http://purl.org/dc/terms/modified'' | ''DwC term: http://purl.org/dc/terms/modified'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: record_scrutiny_date | catalogue-of-life-spd-plugin: record_scrutiny_date | ||
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|- | |- | ||
− | + | | '''parent''' | |
− | + | | The TaxonomyItem of the immediate higher-rank parent taxon (in a classification). | |
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''DwC term: none'' | ''DwC term: none'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: classification | catalogue-of-life-spd-plugin: classification | ||
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|- | |- | ||
− | + | | '''properties''' | |
− | + | | Comments or notes about the taxon or name or data sources. | |
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''DwC term: none'' | ''DwC term: none'' | ||
− | + | | brazilian-flora-spd-plugin: | |
catalogue-of-life-spd-plugin: references | catalogue-of-life-spd-plugin: references | ||
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|- | |- | ||
− | + | | '''rank''' | |
− | + | | The taxonomic rank of the most specific name in the scientificName. | |
Recommended vocabulary: | Recommended vocabulary: | ||
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''DwC term: http://rs.tdwg.org/dwc/terms/taxonRank'' | ''DwC term: http://rs.tdwg.org/dwc/terms/taxonRank'' | ||
− | + | | brazilian-flora-spd-plugin: rank | |
catalogue-of-life-spd-plugin: rank | catalogue-of-life-spd-plugin: rank | ||
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|- | |- | ||
− | + | | '''scientificName''' | |
− | + | | The scientific name of taxon with or without authorship information depending on the format of the source database. | |
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''DwC term: http://rs.tdwg.org/dwc/terms/scientificName'' | ''DwC term: http://rs.tdwg.org/dwc/terms/scientificName'' | ||
− | + | | brazilian-flora-spd-plugin: html_full_name | |
catalogue-of-life-spd-plugin: name | catalogue-of-life-spd-plugin: name | ||
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|- | |- | ||
− | + | | '''status''' | |
− | + | | The status of a taxon. | |
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''DwC term: http://rs.tdwg.org/dwc/terms/taxonomicStatus'' | ''DwC term: http://rs.tdwg.org/dwc/terms/taxonomicStatus'' | ||
− | + | | | |
|} | |} |
Revision as of 15:30, 14 December 2012
TaxonomyItem
Field | Description | Mapping |
---|---|---|
author | If the authority is known and can be separated from the rest of the scientific name, the authority string should also be placed in the ‘author’ field.
Example: (Schltdl.) Crins
Required: false DwC term: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship |
brazilian-flora-spd-plugin: au
catalogue-of-life-spd-plugin: author irmng-spd-plugin: scientificnameauthorship itis-spd-plugin: table taxon_authors_lkp → taxon_author obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: AphiaRecord record - record.getAuthority() |
citation | Citation information specified by the data publisher.
Example: Accessed through: World Register of Marine Species at http://www.marinespecies.org/aphia.php?p=taxdetails&id=105838 on 2012-11-27
Required: false |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: irmng-spd-plugin: nameaccordingto itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: AphiaRecord record - record.getCitation() |
commonNames | A common or vernacular name.
Example: “Andean Condor", "Condor Andino", "American Eagle", "Gönsegeier"
Required: false |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: common_names irmng-spd-plugin: itis-spd-plugin: Table vernaculars → obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: WormsPlugin.binding.getAphiaVernacularsByID(record.getAphiaID()) |
credits | Citation information specified by the data publisher.
Required: false |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: irmng-spd-plugin: itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: |
id | The unique identifier used for a name or taxon reference in the core data file.
Required: true DwC term: http://rs.tdwg.org/dwc/terms/taxonID |
brazilian-flora-spd-plugin: id
catalogue-of-life-spd-plugin: id irmng-spd-plugin: taxonid itis-spd-plugin: Table longnames → tsn obis-spd-plugin: ncbi-spd-plugin: Table nodes → tax_id worms-spd-plugin: AphiaRecord record - record.getAphiaID() |
lsid | Exclusively used to reference an external and resolvable identifier that returns nomenclatural (not taxonomic) details of a name. Use taxonID to refer to taxa. Use to explicitly refer to an external nomenclatural record.
Example: “urn:lsid:ipni.org:names:37829-1:1.3”http://rs.tdwg.org/dwc/terms/scientificNameID
Required: false |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: irmng-spd-plugin: itis-spd-plugin: urn:lsid:itis.gov:itis_tsn:TSN obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: AphiaRecord record - record.getLsid() |
modified | Date when the record was last updated
Example: “2009-08-21”
Required: false DwC term: http://purl.org/dc/terms/modified |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: record_scrutiny_date irmng-spd-plugin: modified itis-spd-plugin: table taxonomic_units → update_date obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: |
parent | The TaxonomyItem of the immediate higher-rank parent taxon (in a classification).
Required: false DwC term: none |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: classification irmng-spd-plugin: parentnameusageid itis-spd-plugin: table taxonomic_units → parent_tsn obis-spd-plugin: ncbi-spd-plugin: table nodes → parent_tax_id worms-spd-plugin: WormsPlugin.binding.getAphiaClassificationByID(record.getAphiaID()) |
properties | Comments or notes about the taxon or name or data sources.
Required: false DwC term: none |
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: references irmng-spd-plugin: itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: |
rank | The taxonomic rank of the most specific name in the scientificName.
Recommended vocabulary: http://rs.gbif.org/vocabulary/gbif/rank.xml Example: "subspecies", "varietas", "forma", "species", "genus"
Required: true DwC term: http://rs.tdwg.org/dwc/terms/taxonRank |
brazilian-flora-spd-plugin: rank
catalogue-of-life-spd-plugin: rank irmng-spd-plugin: taxonrank itis-spd-plugin: table taxon_unit_types → rank_name obis-spd-plugin: ncbi-spd-plugin: Table nodes → rank worms-spd-plugin: AphiaRecord record - record.getRank() |
scientificName | The scientific name of taxon with or without authorship information depending on the format of the source database.
Required: true |
brazilian-flora-spd-plugin: html_full_name
catalogue-of-life-spd-plugin: name irmng-spd-plugin: scientificname itis-spd-plugin: table longnames → completename obis-spd-plugin: ncbi-spd-plugin: Table names → name_txt worms-spd-plugin: AphiaRecord record - record.getScientificname() |
status | The status of a taxon.
Required: true |
TaxonomyStatus
status | The status of the use of the scientificName as a label for a taxon.
Controlled vocabulary: "accepted", "invalid", "misapplied", "provisional", “synonym”, “unknown”, “valid”.
|
brazilian-flora-spd-plugin: status
catalogue-of-life-spd-plugin: name_status irmng-spd-plugin: taxonomicstatus itis-spd-plugin: table taxonomic_units → name_usage obis-spd-plugin: ncbi-spd-plugin: Table names → name_class worms-spd-plugin: AphiaRecord record - record.getStatus() |
Data Type: string
Required: true | ||
refId | This value points to the record representing the valid (zoological) or accepted (botanical)
name using the taxonID of that record as the “pointer.”
|
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: gbif-spd-plugin: irmng-spd-plugin: acceptednameusageid itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: species-link-spd-plugin: worms-spd-plugin: AphiaRecord record - record.getValid_AphiaID() |
Data Type: string
Required: false | ||
statusAsString | Comments or notes about the taxon or name.
Example: “Type consists of a skull and skeletal fragments”.
|
brazilian-flora-spd-plugin: qualifier
catalogue-of-life-spd-plugin: irmng-spd-plugin: taxonremarks itis-spd-plugin: table taxonomic_units → unaccept_reason obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: AphiaRecord record - record.getStatus() |
Data Type: string
Required: false |
CommonName
language | A language of the resource.
|
brazilian-flora-spd-plugin: status
catalogue-of-life-spd-plugin: name_status irmng-spd-plugin: taxonomicstatus itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: Vernacular vernacular - vernacular.getLanguage() |
Data Type: string
Required: true DwC term: http://purl.org/dc/terms/language | ||
name | A common or vernacular name.
|
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: irmng-spd-plugin: acceptednameusageid itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: Vernacular vernacular - vernacular.getVernacular() |
Data Type: string
Required: false |
ElementProperty
name | Key used to identify comments or notes.
Example: “Reference”, “Source”
|
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: Source Database, Reference irmng-spd-plugin: itis-spd-plugin: Source obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: additional source, basis of record, context source (Deepsea) |
Data Type: string
Required: false DwC term: none | ||
value | Example:
“Compagno, L.J.V.1999Checklist of living elasmobranchs.p. 471-498. In W.C. Hamlett (ed.) Sharks, skates, and rays: the biology of elasmobranch fishes. John Hopkins University Press, Maryland.”, “DatabaseFishBase”
|
brazilian-flora-spd-plugin:
catalogue-of-life-spd-plugin: irmng-spd-plugin: itis-spd-plugin: obis-spd-plugin: ncbi-spd-plugin: worms-spd-plugin: Source source – source.getReference(), source.getLink(), source.getUrl() |
Data Type: string
Required: false DwC term: none |
Occurrence
The following schema specifies the content field in a occurrence object.
basisOfRecord | The specific nature of the data record. Recommended best practice is to use a controlled vocabulary such as the Darwin Core Type Vocabulary (http://rs.tdwg.org/dwc/terms/type-vocabulary/index.htm).
Examples: "PreservedSpecimen", "FossilSpecimen", "LivingSpecimen", "HumanObservation", "MachineObservation".
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
catalogNumber | An identifier (preferably unique) for the record within the data set or collection.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
citation | Citation information specified by the data publisher.
Example: Accessed through: speciesLink at http://splink.cria.org.br
Required: false DwC term: ? |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
country | The name of the country or major administrative unit in which the Location occurs.
Required: false DwC term: http://rs.tdwg.org/dwc/terms/country |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
collectionCode | The name, acronym, coden, or initialism identifying the collection or data set from which the record was derived.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
decimalLatitude | The geographic latitude.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
decimalLongitude | The geographic longitude.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
EventDate | The date-time when the event was recorded.
Examples: "1963-03-08T14:07-0600"
Required: false DwC term: http://rs.tdwg.org/dwc/terms/eventDate |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
kingdom | The full scientific name of the kingdom in which the taxon is classified.
Required: false DwC term: http://rs.tdwg.org/dwc/terms/kingdom |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
family | The full scientific name of the family in which the taxon is classified.
Required: false DwC term: http://rs.tdwg.org/dwc/terms/family |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
country | The name of the country or major administrative unit in which the Location occurs.
Required: false DwC term: http://rs.tdwg.org/dwc/terms/country |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
maximumDepthInMeters | The greater depth of a range of depth below the local surface, in meters.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
minimumDepthInMeters | The lesser depth of a range of depth below the local surface, in meters.
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
dateLastModified | The most recent date-time on which the resource was changed.
Examples: "1963-03-08T14:07-0600"
Required: false DwC term: http://purl.org/dc/terms/modified |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
identifiedBy | A list (concatenated and separated) of names of people, groups, or organizations who assigned the Taxon to the subject.
Example: "James L. Patton"
Required: false |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |
scientificName | The scientific name of taxon with or without authorship information depending on the format of the source database.
Required: true |
gbif-spd-plugin:
obis-spd-plugin: species-link-spd-plugin: |